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Fang, Q and Shortle, D (2006) Protein refolding in silico with atom-based statistical potentials and conformational search using a simple genetic algorithm J. Mol. Biol. 359:1456-1467.PubMed Reference
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Ohnishi, S., Lee, A.L., Edgell, M.H. and Shortle, D. (2004) Direct demonstration of structural similarity between native and denatured eglin C. Biochemistry 43: 4064-4070.PubMed Reference
Ohnishi S. and Shortle, D. (2003) Effect of denaturants and substitutions of hydrophobic residues on backbone dynamics of denatured staphylococcal nuclease. Protein Science 12: 1530-1537.PubMed Reference
Shortle, D. (2003) Propensities, probabilities, and the Boltzmann hypothesis. Protein Science 12: 1298-1302.PubMed Reference
Fang, Q. and Shortle, D (2003) Prediction of Protein Structure by Emphasizing Local Side-Chain / Backbone Interactions in Ensembles of Turn Fragments Proteins: 53: 486-490.PubMed Reference
Choy, W.-Y., Shortle, D. and Kay, L.E. (2003) Side chain dynamics in unfolded protein states: A 2H spin relaxation study of D131D. J. Amer. Chem. Soc., 125:1748-1758.PubMed Reference
Ohnishi, S. and Shortle, D. (2003) Observation of residual dipolar couplings in short peptides. Proteins: 50: 546-51 PubMed Reference
Shortle, D. (2002) The Expanded Denatured State: An Ensemble of Conformations Trapped in a Locally Encoded Topological Space. Adv. Protein Chem. 62: 1-23.PubMed Reference
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Ackerman, M. S. and Shortle, D. (2002) Molecular Alignment of Denatured States of Staphylococcal Nuclease with Strained Polyacrylamide Gels and Alkyl-PEG Bicelles. Biochemistry 41: 3089-3095.PubMed Reference
Shortle, D. (2002) Composites of Local Structural Propensities: Evidence for Local Encoding of Long Range Structure. Protein Science 11: 18-26.PubMed Reference
Shortle, D. and Ackerman, M. S. (2001) Persistence of native-like topology in a denatured protein in 8 M urea. Science 293: 487-489.PubMed Reference
Shortle, D. (2000) Prediction of protein structure (a primer). Current Biol. 10: R49-R51.PubMed Reference